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  UCSC Genome Browser Utilities
 

This page contains links to tools and utilities created by the UCSC Genome Bioinformatics Group.

  • Batch Coordinate Conversion (liftOver) - converts genome coordinates and genome annotation files between assemblies. The current version supports both forward and reverse conversions, as well as conversions between selected species.
  • DNA Duster - removes formatting characters and other non-sequence-related characters from an input sequence. Offers several configuration options for the output format, including translated protein.
  • Protein Duster - removes formatting characters and other non-sequence-related characters from an input sequence. Offers several configuration options for the output format.
  • Phylogenetic Tree Gif Maker - creates a gif image from the phylogenetic tree specification given. Offers several configuration options for branch lengths, normalized lengths, branch labels, legend etc.
  • Source Code Downloads - The Genome Browser, Blat and liftOver source code is freely downloadable for academic, noncommercial, and personal use.